Run PepSite on a PDB structure

PDB code:   PDB chain:  Use non-prot/hoh ats in surf calc?

Peptide sequence: ?

Run PepSite on your own PDB file

 Use non-prot/hoh ats in surf calc?

Peptide sequence: ?

PepSite was originally described in the following article:

Accurate prediction of peptide binding sites on protein surfaces.
Petsalaki E, Stark A, García-Urdiales E, and Russell RB.
PLoS Comput Biol. 2009 Mar;5(3):e1000335.

Contributors to PepSite software development

Technical information about the PepSite webserver

  • Matches calculated with PepSite v2.2.20.
  • Hot spots pre-calculated with PepSite v2.2.20.
  • Running webserver v0.0.28.
  • Molecular visualizations generated using JSmol v14.6.1.

The PepSite logo is a courtesy of Tim Heckhausen.