Run PepSite on a PDB structure

PDB code:   PDB chain:

Peptide sequence: ?

Run PepSite on your own PDB file

Peptide sequence: ?

You have predicted binding of the peptide PDNGTSAWGE on the protein surface from PDB 1w9h, chain A (Piwi protein AF_1318 from Archaeoglobus fulgidus).

The interactive visualization below shows the protein structure and a predicted peptide binding spot. (Don't see anything?) To learn the basic controls, click here.

To display a different prediction, click on the correponding row from the table below, which shows the top matches ranked according to statistical significance (p-value).

rank p-value N
1 0.5701 4 ----- ----- asn-3 gly-4 ----- ser-6 ----- trp-8 ----- -----
2 0.605 4 ----- asp-2 ----- gly-4 ----- ser-6 ----- trp-8 ----- -----
3 0.6073 4 ----- ----- asn-3 ----- ----- ser-6 ala-7 trp-8 ----- -----
4 0.6076 4 ----- ----- asn-3 gly-4 ----- ser-6 ----- trp-8 ----- -----
5 0.6244 4 pro-1 ----- asn-3 ----- thr-5 ----- ----- ----- ----- glu-10
6 0.6693 4 ----- asp-2 asn-3 ----- ----- ser-6 ala-7 ----- ----- -----
7 0.698 4 ----- asp-2 asn-3 ----- ----- ----- ----- ----- gly-9 glu-10
8 0.7542 4 ----- asp-2 ----- gly-4 thr-5 ser-6 ----- ----- ----- -----
9 0.7648 4 ----- ----- ----- ----- thr-5 ser-6 ala-7 trp-8 ----- -----
10 0.7843 3 pro-1 asp-2 asn-3 ----- ----- ----- ----- ----- ----- -----

Each row from the table above is colored according to statistical significance (p-value) following the color scale below (red = highly significant; yellow = moderately significant; white = not significant).

You can download a PDB file with the top matches or with the interacting receptor residues. For a description of the format used, click here.