You have predicted binding of the peptide GTPPPNYDSL on the protein surface from PDB 2joc, chain "A" (Itchy E3 ubiquitin protein ligase from ; Mus musculus).
The interactive visualization below shows the protein structure and a predicted peptide binding spot. (Don't see anything?) To learn the basic controls, click here.
To display a different prediction, click on the correponding row from the table below, which shows the top matches ranked according to statistical significance (p-value).
| rank | p-value | N | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 0.01375 | 6 | ----- | thr-2 | pro-3 | pro-4 | pro-5 | asn-6 | tyr-7 | ----- | ----- | ----- |
| 2 | 0.01484 | 6 | ----- | thr-2 | pro-3 | pro-4 | pro-5 | asn-6 | tyr-7 | ----- | ----- | ----- |
| 3 | 0.01667 | 6 | ----- | thr-2 | pro-3 | pro-4 | pro-5 | asn-6 | tyr-7 | ----- | ----- | ----- |
| 4 | 0.02894 | 6 | ----- | ----- | pro-3 | pro-4 | pro-5 | asn-6 | tyr-7 | asp-8 | ----- | ----- |
| 5 | 0.03336 | 6 | ----- | ----- | pro-3 | pro-4 | pro-5 | asn-6 | tyr-7 | asp-8 | ----- | ----- |
| 6 | 0.03407 | 5 | ----- | thr-2 | pro-3 | pro-4 | pro-5 | asn-6 | ----- | ----- | ----- | ----- |
| 7 | 0.03648 | 5 | ----- | ----- | pro-3 | pro-4 | pro-5 | asn-6 | tyr-7 | ----- | ----- | ----- |
| 8 | 0.03671 | 5 | ----- | thr-2 | pro-3 | pro-4 | pro-5 | asn-6 | ----- | ----- | ----- | ----- |
| 9 | 0.0378 | 5 | ----- | ----- | pro-3 | pro-4 | pro-5 | asn-6 | tyr-7 | ----- | ----- | ----- |
| 10 | 0.04111 | 5 | ----- | thr-2 | pro-3 | pro-4 | pro-5 | asn-6 | ----- | ----- | ----- | ----- |
Each row from the table above is colored according to statistical significance (p-value) following the color scale below (red = highly significant; yellow = moderately significant; white = not significant).
You can download a PDB file with the top matches or with the interacting receptor residues. For a description of the format used, click here.